Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_236

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8603 and 8604 are separated by 255 nucleotides8604 and 8605 are separated by 53 nucleotides mRNA_235: 8603 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 578,724 to 580,674 8603 mRNA_236: 8604 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 580,930 to 582,126 8604 mRNA_237: 8605 - K08098 PIGZ, SMP3 phosphatidylinositol glycan, class Z, at 582,180 to 584,217 8605

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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580,148 - 8603 mRNA_235 0.73 -0.7
580,168 + 8603 mRNA_235 0.74 +0.7
580,288 + 8603 mRNA_235 0.80 +0.3
580,739 + -0.3
580,777 + -0.5
580,779 - +0.8
580,780 - -1.2
580,788 + +0.3
580,789 + +0.1
580,927 + +0.3
581,073 - 8604 mRNA_236 0.12 +0.1
581,493 - 8604 mRNA_236 0.47 -1.2
581,642 - 8604 mRNA_236 0.59 +1.3
581,950 - 8604 mRNA_236 0.85 +0.8
581,957 + 8604 mRNA_236 0.86 +0.2
582,034 - -2.1
582,076 + -2.8
582,105 + -1.2
582,106 + +1.7

Or see this region's nucleotide sequence