Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_238

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8606 and 8607 are separated by 351 nucleotides mRNA_238: 8606 - Hypothetical Protein, at 585,239 to 585,472 8606 mRNA_239: 8607 - K01809 manA, MPI mannose-6-phosphate isomerase, at 585,824 to 587,660 8607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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584,244 + +1.1
584,442 + +1.5
584,566 + -0.5
584,582 - +1.8
584,589 - +1.4
584,597 - +1.4
584,606 + -0.3
584,612 - -0.7
584,615 - +0.6
584,730 + -1.5
584,904 + +0.1
584,921 + -0.9
585,039 + +0.0
585,170 - -0.0
585,178 - -0.1
585,454 - +0.2
585,636 - -1.2
585,711 + +1.3
585,758 + +0.3
585,764 + +0.4
585,769 + +0.2
585,769 - +1.3

Or see this region's nucleotide sequence