Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_255

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8622 and 8623 are separated by 297 nucleotides8623 and 8624 are separated by 273 nucleotides mRNA_254: 8622 - KOG0970 DNA polymerase alpha, catalytic subunit, at 612,522 to 613,328 8622 mRNA_255: 8623 - K02320 POLA1 DNA polymerase alpha subunit A, at 613,626 to 618,274 8623 mRNA_256: 8624 - K11254 H4 histone H4, at 618,548 to 619,064 8624

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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615,460 - 8623 mRNA_255 0.39 +1.5
618,978 - 8624 mRNA_256 0.83 +0.9
618,979 + 8624 mRNA_256 0.83 +0.5
619,157 - +2.0
619,243 - -0.4
619,251 - -0.1
619,258 - +0.0
619,273 - +0.8

Or see this region's nucleotide sequence