Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_257

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8624 and 8625 are separated by 698 nucleotides8625 and 8626 are separated by 720 nucleotides mRNA_256: 8624 - K11254 H4 histone H4, at 618,548 to 619,064 8624 mRNA_257: 8625 - KOG1745 Histones H3 and H4, at 619,763 to 620,480 8625 mRNA_258: 8626 - HMMPfam-Eukaryotic protein of unknown function (DUF1764)-PF08576, at 621,201 to 621,954 8626

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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618,978 - 8624 mRNA_256 0.83 +0.9
618,979 + 8624 mRNA_256 0.83 +0.5
619,157 - +2.0
619,243 - -0.4
619,251 - -0.1
619,258 - +0.0
619,273 - +0.8
619,312 + +1.3
619,312 + +0.8
619,324 - +0.5
619,324 + -0.3
619,328 + -0.2
619,350 - +0.2
619,381 - +0.2
619,383 + +0.6
619,384 - +1.9
619,389 - -0.4
619,392 - -0.4
619,395 - -0.7
619,399 + -0.8
619,400 + +0.9
619,431 + -0.8
619,433 + -0.4
619,463 - -0.1
619,470 + -0.8
619,587 - -0.3
619,624 - -1.0
619,628 - +2.5
619,628 - +1.9
619,633 + +0.5
619,640 - -0.6
619,643 - +0.4
619,647 + +0.8
619,650 + +1.2
619,650 - -0.1
619,653 - -2.9
619,653 + +1.5
619,655 - -0.4
619,658 + +1.8
619,660 + -0.1
619,685 + +1.8
619,692 + -0.1
619,795 + -0.2
619,958 + 8625 mRNA_257 0.27 +0.3
620,225 + 8625 mRNA_257 0.64 -0.6
620,645 - +0.6
620,675 - -1.1
620,957 + +0.4
621,104 + +0.6

Or see this region's nucleotide sequence