Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_291

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8658 and 8659 are separated by 570 nucleotides8659 and 8660 are separated by 162 nucleotides mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689,147 to 690,940 8658 mRNA_291: 8659 - K03012 RPB4, POLR2D DNA-directed RNA polymerase II subunit RPB4, at 691,511 to 692,003 8659 mRNA_292: 8660 - HMMPfam-Endoplasmic reticulum-based factor for assembly of V-ATPase-PF11712, at 692,166 to 693,130 8660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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690,750 + 8658 mRNA_290 0.89 -0.6
690,753 + 8658 mRNA_290 0.90 -0.3
691,028 + -0.5
691,042 - -1.0
691,126 - +1.8
691,131 - -0.6
691,146 + -1.1
691,293 - -0.8
691,297 - +0.2
691,302 - -1.1
691,308 - -0.3
691,313 + +1.9
691,751 + 8659 mRNA_291 0.49 +1.4
692,025 - -1.0

Or see this region's nucleotide sequence