Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_308

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8675 and 8676 are separated by 351 nucleotides8676 and 8677 are separated by 273 nucleotides mRNA_307: 8675 - K12195 CHMP6, VPS20 charged multivesicular body protein 6, at 729,336 to 730,471 8675 mRNA_308: 8676 - K07952 ARFRP1 ADP-ribosylation factor related protein 1, at 730,823 to 731,905 8676 mRNA_309: 8677 - K00643 E2.3.1.37, ALAS 5-aminolevulinate synthase, at 732,179 to 734,206 8677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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730,515 + +0.8
730,818 + +2.1
730,910 - +0.1
730,923 + +1.6
731,076 - 8676 mRNA_308 0.23 -0.1
731,082 + 8676 mRNA_308 0.24 +1.4
731,214 - 8676 mRNA_308 0.36 -0.0
731,350 - 8676 mRNA_308 0.49 +0.7
731,353 - 8676 mRNA_308 0.49 -1.7
731,372 + 8676 mRNA_308 0.51 -0.1
731,807 - -0.5
731,814 + +1.4
731,975 - -0.4
731,978 + -0.8
732,094 - +0.5
732,095 - -0.7
732,095 - +0.6
732,096 - +0.7
732,096 + -0.3
732,106 - -0.1
732,108 + +1.2
732,111 + +1.6
732,138 + -0.4
732,142 - +1.4
732,367 - +0.3

Or see this region's nucleotide sequence