Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_354

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8721 and 8722 are separated by 128 nucleotides8722 and 8723 are separated by 312 nucleotides mRNA_353: 8721 - K02258 COX11 cytochrome c oxidase assembly protein subunit 11, at 826,026 to 827,001 8721 mRNA_354: 8722 - K17583 NOM1 nucleolar MIF4G domain-containing protein 1, at 827,130 to 830,488 8722 mRNA_355: 8723 - Hypothetical Protein, at 830,801 to 831,631 8723

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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827,043 + -0.8
827,062 + -0.1
827,065 - -1.0
827,089 + +0.5
830,525 + +0.2
830,544 + +0.4
830,555 - +0.0
830,682 + -0.1
830,693 + +1.0
830,717 + +1.2
830,729 - -0.2
831,108 - 8723 mRNA_355 0.37 +0.4
831,277 + 8723 mRNA_355 0.57 -0.9
831,285 - 8723 mRNA_355 0.58 +0.2

Or see this region's nucleotide sequence