Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_362

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8730 and 8731 are separated by 150 nucleotides mRNA_362: 8730 - HMMPfam-CENP-S associating Centromere protein X-PF09415,SUPERFAMILY--SSF47113, at 842,601 to 843,076 8730 mRNA_363: 8731 - K14776 DDX10, DBP4 ATP-dependent RNA helicase DDX10/DBP4, at 843,227 to 846,125 8731

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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841,662 + +2.8
841,664 + +2.4
841,678 + +2.5
841,684 + -0.2
841,686 - +1.4
841,704 + +0.6
841,717 - -0.4
841,753 - -0.4
841,754 + +1.5
841,766 - +1.8
841,797 + +1.2
841,797 + +0.5
841,812 + +1.4
841,818 + +2.0
841,818 + -0.0
841,822 - +0.1
842,154 + +0.6
842,301 - +2.1
842,710 - 8730 mRNA_362 0.23 +1.1
842,852 - 8730 mRNA_362 0.53 +3.6
842,863 + 8730 mRNA_362 0.55 +1.3
842,868 + 8730 mRNA_362 0.56 +0.4
842,998 - 8730 mRNA_362 0.83 +0.3
843,005 + 8730 mRNA_362 0.85 +0.1
843,015 - 8730 mRNA_362 0.87 +2.7
843,142 - -0.3
843,154 - -0.1
843,160 + -0.8
843,172 + -0.6
843,176 - -0.2
843,183 - +0.4

Or see this region's nucleotide sequence