Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_374

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8741 and 8742 are separated by 237 nucleotides8742 and 8743 are separated by 434 nucleotides mRNA_373: 8741 - KOG2542 Uncharacterized conserved protein (YdiU family), at 866,989 to 869,456 8741 mRNA_374: 8742 - Hypothetical Protein, at 869,694 to 870,348 8742 mRNA_375: 8743 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927, at 870,783 to 871,769 8743

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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868,812 + 8741 mRNA_373 0.74 -0.8
868,928 - 8741 mRNA_373 0.79 +0.1
869,218 + +1.0
869,383 + -0.8
869,795 + 8742 mRNA_374 0.15 +0.3
870,258 - 8742 mRNA_374 0.86 +1.7
870,366 - +1.6
870,385 - -1.2
870,386 + +0.0
870,402 - -0.8
870,409 - +0.4
870,519 - -1.0
870,539 - +1.3
870,550 + -1.1
870,677 + +0.6
870,808 - +1.8
870,818 - -0.5
870,847 - +2.0
870,855 + +0.5
870,981 + 8743 mRNA_375 0.20 -1.5

Or see this region's nucleotide sequence