Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_384

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8751 and 8752 are separated by 601 nucleotides8752 and 8753 are separated by 60 nucleotides mRNA_383: 8751 - K02922 RP-L37e, RPL37 large subunit ribosomal protein L37e, at 890,896 to 891,869 8751 mRNA_384: 8752 - KOG0004 Ubiquitin/40S ribosomal protein S27a fusion, at 892,471 to 892,767 8752 mRNA_385: 8753 - Hypothetical Protein, at 892,828 to 898,381 8753

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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892,974 + +1.5
892,987 + -0.5
892,994 - +0.2
893,000 - +1.2
893,403 - 8753 mRNA_385 0.10 +0.5
893,711 + 8753 mRNA_385 0.16 +0.0
893,730 + 8753 mRNA_385 0.16 +0.0

Or see this region's nucleotide sequence