Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_392

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8759 and 8760 are separated by 713 nucleotides8760 and 8761 are separated by 190 nucleotides mRNA_391: 8759 - K01760 metC cystathionine beta-lyase, at 912,636 to 914,194 8759 mRNA_392: 8760 - K12834 PHF5A PHD finger-like domain-containing protein 5A, at 914,908 to 915,580 8760 mRNA_393: 8761 - Hypothetical Protein, at 915,771 to 916,536 8761

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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914,070 + +0.4
914,291 - -0.5
914,292 - -0.5
914,302 - -0.7
914,303 - +1.6
914,307 - +0.3
915,589 + +0.4
915,610 + +1.1
915,617 + +0.6
915,618 - -0.1
915,623 + -0.2
915,752 - +0.6
915,775 + -0.4
916,040 - 8761 mRNA_393 0.35 -0.0
916,347 + 8761 mRNA_393 0.75 +0.5
916,516 + +1.9

Or see this region's nucleotide sequence