Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_401

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8768 and 8769 are separated by 606 nucleotides8769 and 8770 are separated by 42 nucleotides mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930,496 to 933,710 8768 mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934,317 to 936,010 8769 mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936,053 to 937,253 8770

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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933,604 - -1.9
933,650 - +1.4
934,046 - +0.1
934,195 + -1.1
934,239 - -1.5
934,255 + +0.2
934,364 - +1.1
934,374 + -0.5
934,380 - -0.1
934,384 + +0.7
934,502 - 8769 mRNA_401 0.11 -0.5
934,530 + 8769 mRNA_401 0.13 +0.8
934,539 - 8769 mRNA_401 0.13 -1.2
934,545 - 8769 mRNA_401 0.13 +1.0
935,384 + 8769 mRNA_401 0.63 +0.5
935,386 - 8769 mRNA_401 0.63 -0.3
935,797 - 8769 mRNA_401 0.87 +0.2
935,835 + 8769 mRNA_401 0.90 +2.1
935,932 + -0.1
935,956 - -3.3
935,995 - +0.1
936,009 - -0.1
936,011 + -0.0
936,017 - +1.1
936,018 + -0.6
936,047 + -1.4
936,055 + +0.6
936,083 - +1.8
936,084 + +2.9
936,091 - +0.4
936,091 - +1.2
936,092 + +0.4
936,101 + -0.2
936,103 - +0.9
936,106 - -0.2
936,111 + -1.1
936,122 - -0.3
936,123 - +0.1
936,130 - +1.8
936,134 - +1.6
936,135 - +0.9
936,138 + -0.1
936,138 + -0.0
936,152 - +0.9
936,195 + 8770 mRNA_402 0.12 +0.4
936,206 + 8770 mRNA_402 0.13 -0.3
936,209 - 8770 mRNA_402 0.13 +2.4
936,211 + 8770 mRNA_402 0.13 +0.2
936,213 + 8770 mRNA_402 0.13 -0.3
936,235 + 8770 mRNA_402 0.15 +0.4
936,242 - 8770 mRNA_402 0.16 +1.6
936,254 - 8770 mRNA_402 0.17 +0.4
936,254 - 8770 mRNA_402 0.17 -0.6
936,259 - 8770 mRNA_402 0.17 -0.4
936,277 - 8770 mRNA_402 0.19 -0.0
936,293 - 8770 mRNA_402 0.20 +0.5
936,309 - 8770 mRNA_402 0.21 +1.7
936,310 + 8770 mRNA_402 0.21 +0.7
936,311 + 8770 mRNA_402 0.21 +0.3
936,312 - 8770 mRNA_402 0.22 +0.4
936,320 + 8770 mRNA_402 0.22 +0.2
936,325 - 8770 mRNA_402 0.23 +0.1
936,330 - 8770 mRNA_402 0.23 +0.3
936,331 - 8770 mRNA_402 0.23 -0.2
936,332 - 8770 mRNA_402 0.23 -0.6
936,343 - 8770 mRNA_402 0.24 +0.8
936,349 - 8770 mRNA_402 0.25 -0.4
936,368 + 8770 mRNA_402 0.26 +0.2
936,380 - 8770 mRNA_402 0.27 +0.7
936,381 - 8770 mRNA_402 0.27 -0.5
936,381 - 8770 mRNA_402 0.27 +1.0
936,384 + 8770 mRNA_402 0.28 -0.1
936,385 + 8770 mRNA_402 0.28 +0.4
936,396 + 8770 mRNA_402 0.29 +1.1
936,396 - 8770 mRNA_402 0.29 +0.2
936,429 - 8770 mRNA_402 0.31 -1.5
936,477 - 8770 mRNA_402 0.35 -0.2
936,512 + 8770 mRNA_402 0.38 +1.6
936,539 + 8770 mRNA_402 0.40 -0.6
936,542 + 8770 mRNA_402 0.41 +1.8
936,545 + 8770 mRNA_402 0.41 -1.6
936,550 + 8770 mRNA_402 0.41 +1.1
936,567 - 8770 mRNA_402 0.43 +1.3
936,578 + 8770 mRNA_402 0.44 -0.2
936,615 + 8770 mRNA_402 0.47 -0.6
936,633 + 8770 mRNA_402 0.48 -0.2
936,645 - 8770 mRNA_402 0.49 +0.3
936,649 - 8770 mRNA_402 0.50 +0.7
936,652 - 8770 mRNA_402 0.50 +0.5
936,664 + 8770 mRNA_402 0.51 +0.1
936,664 + 8770 mRNA_402 0.51 -0.8
936,669 + 8770 mRNA_402 0.51 +0.3
936,683 - 8770 mRNA_402 0.52 +0.4
936,683 - 8770 mRNA_402 0.52 -1.2
936,703 - 8770 mRNA_402 0.54 -0.1
936,712 - 8770 mRNA_402 0.55 +0.4
936,743 - 8770 mRNA_402 0.57 +1.2
936,750 - 8770 mRNA_402 0.58 +1.3
936,750 - 8770 mRNA_402 0.58 +0.1
936,772 + 8770 mRNA_402 0.60 -0.3
936,774 - 8770 mRNA_402 0.60 -0.2
936,775 + 8770 mRNA_402 0.60 -0.3
936,781 + 8770 mRNA_402 0.61 -0.4
936,790 + 8770 mRNA_402 0.61 +0.3
936,791 - 8770 mRNA_402 0.61 +2.4
936,793 - 8770 mRNA_402 0.62 -1.5
936,801 - 8770 mRNA_402 0.62 -0.1
936,809 - 8770 mRNA_402 0.63 +2.4
936,813 - 8770 mRNA_402 0.63 +0.1
936,817 - 8770 mRNA_402 0.64 -0.0
936,827 - 8770 mRNA_402 0.64 +0.5
936,829 + 8770 mRNA_402 0.65 -0.6
936,830 - 8770 mRNA_402 0.65 +0.8
936,832 - 8770 mRNA_402 0.65 -0.7
936,837 + 8770 mRNA_402 0.65 +1.9
936,887 - 8770 mRNA_402 0.69 +1.8

Or see this region's nucleotide sequence