Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_417

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8784 and 8785 are separated by 124 nucleotides mRNA_416: 8784 - Hypothetical Protein, at 972,046 to 973,465 8784 mRNA_417: 8785 - KOG4697 Integral membrane protein involved in transport between the late Golgi and endosome, at 973,590 to 974,560 8785

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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972,818 + 8784 mRNA_416 0.54 +0.6
972,854 + 8784 mRNA_416 0.57 -0.6
973,013 + 8784 mRNA_416 0.68 -0.3
973,096 - 8784 mRNA_416 0.74 -0.4
973,264 + 8784 mRNA_416 0.86 -0.0
973,447 - -0.7
973,484 - +0.0
973,582 - -0.5
973,583 - -0.9
973,704 - 8785 mRNA_417 0.12 -0.3
973,721 + 8785 mRNA_417 0.13 -0.2
973,722 - 8785 mRNA_417 0.14 -0.9
974,570 + -0.9
974,589 - +0.1
974,597 + -0.7
974,730 + +0.8
974,730 + +1.1
974,763 + +0.4
974,851 - +1.5
974,902 - -0.2
974,991 + +2.9
974,991 - +0.0
975,008 - +0.2
975,020 - -0.1
975,022 - -0.2
975,025 + -0.4
975,025 - +0.3
975,025 - -1.3
975,025 + -0.6
975,132 + -0.1
975,325 + -0.0
975,337 - -0.6
975,466 + +0.9

Or see this region's nucleotide sequence