Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_444

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8811 and 8812 are separated by 335 nucleotides8812 and 8813 are separated by 279 nucleotides mRNA_443: 8811 - KOG2742 Predicted oxidoreductase, at 1,029,373 to 1,030,485 8811 mRNA_444: 8812 - HMMPfam-Transcription factor IIIC subunit delta N-term-PF12657,HMMPfam-Putative zinc-finger of transcription factor IIIC complex-PF12660,SUPERFAMILY--SSF50978, at 1,030,821 to 1,034,414 8812 mRNA_445: 8813 - K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B), at 1,034,694 to 1,036,039 8813

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,029,920 + 8811 mRNA_443 0.49 +0.5
1,030,203 + 8811 mRNA_443 0.75 -0.1
1,030,359 - 8811 mRNA_443 0.89 +0.5
1,030,364 + 8811 mRNA_443 0.89 +0.1
1,030,379 + +0.6
1,030,669 - +0.1
1,030,674 + +0.5
1,030,679 + +2.3
1,030,681 + -1.2
1,030,691 + -0.4
1,030,813 + +0.6
1,031,490 - 8812 mRNA_444 0.19 +0.5
1,033,562 - 8812 mRNA_444 0.76 +0.7
1,034,263 - -0.1
1,034,413 - -0.3
1,034,568 - -0.2
1,034,589 - +0.7
1,035,011 - 8813 mRNA_445 0.24 +2.0

Or see this region's nucleotide sequence