Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_455

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8822 and 8823 are separated by 511 nucleotides mRNA_454: 8822 - Hypothetical Protein, at 1,057,192 to 1,059,678 8822 mRNA_455: 8823 - KOG1745 Histones H3 and H4, at 1,060,190 to 1,060,901 8823

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,059,243 + 8822 mRNA_454 0.82 -0.0
1,059,358 - 8822 mRNA_454 0.87 +1.4
1,060,029 - +1.3
1,060,176 - +0.2
1,060,181 - +0.7
1,060,320 + 8823 mRNA_455 0.18 +0.4
1,060,798 + 8823 mRNA_455 0.85 +0.2
1,061,092 - -0.4
1,061,243 - +1.2
1,061,244 + +0.0
1,061,327 - +1.0
1,061,348 - +0.2
1,061,384 + -0.9
1,061,494 + -0.3
1,061,499 - -0.7
1,061,511 + -0.5
1,061,515 + +1.1
1,061,523 - -0.2
1,061,548 + +0.1
1,061,570 - +1.2
1,061,571 + +0.3
1,061,579 - -0.5
1,061,579 - -0.2
1,061,611 - +0.3
1,061,616 - -0.5
1,061,617 - +0.2
1,061,624 - +0.4
1,061,631 + +1.6
1,061,633 - +0.1
1,061,657 + +0.9
1,061,659 - -0.4
1,061,660 - -1.0
1,061,670 + -0.4
1,061,671 + -0.6
1,061,676 + +2.9
1,061,698 - -0.2
1,061,722 + -0.6
1,061,759 - -1.7
1,061,767 + +0.2
1,061,777 - +2.1
1,061,782 - -0.4
1,061,801 + -0.2
1,061,806 - +1.0
1,061,809 - -1.1
1,061,809 - -0.6
1,061,810 - -0.4
1,061,812 + -1.0
1,061,813 + -0.6
1,061,814 + +0.6
1,061,814 + -0.9
1,061,828 - +0.6
1,061,837 + +1.3
1,061,838 - +0.4
1,061,847 + +0.7
1,061,848 + +1.3
1,061,850 + -0.1
1,061,850 - +0.8
1,061,854 - -0.4
1,061,866 - +0.1
1,061,867 - +1.6
1,061,871 + +0.4
1,061,877 + +0.2

Or see this region's nucleotide sequence