Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_515

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8882 and 8883 are separated by 279 nucleotides8883 and 8884 are separated by 216 nucleotides mRNA_514: 8882 - KOG0417 Ubiquitin-protein ligase, at 1,224,473 to 1,225,235 8882 mRNA_515: 8883 - Hypothetical Protein, at 1,225,515 to 1,227,526 8883 mRNA_516: 8884 - K04482 RAD51 DNA repair protein RAD51, at 1,227,743 to 1,229,231 8884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,225,052 + 8882 mRNA_514 0.76 -0.4
1,225,187 - +1.0
1,225,204 - +0.6
1,225,323 + -1.4
1,225,329 - +0.6
1,225,332 + -0.7
1,225,333 + -0.6
1,225,335 - -1.6
1,225,337 - -0.1
1,225,341 + -1.4
1,225,341 + -0.1
1,225,344 + -0.1
1,225,345 - -0.3
1,225,354 + +0.3
1,225,358 + +0.3
1,225,458 - -0.3
1,225,471 + -1.0
1,225,495 + -0.1
1,225,625 - +1.5
1,225,932 + 8883 mRNA_515 0.21 +0.7
1,226,236 + 8883 mRNA_515 0.36 +0.3
1,226,363 + 8883 mRNA_515 0.42 +0.5

Or see this region's nucleotide sequence