Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_633

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9000 and 9001 are separated by 272 nucleotides9001 and 9002 are separated by 94 nucleotides mRNA_632: 9000 - K17900 ATG15, AUT5 lipase ATG15, at 1,516,268 to 1,517,647 9000 mRNA_633: 9001 - K14575 AFG2, DRG1, SPATA5 AAA family ATPase, at 1,517,920 to 1,520,918 9001 mRNA_634: 9002 - K18932 ZDHHC palmitoyltransferase, at 1,521,013 to 1,522,610 9002

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,517,022 - 9000 mRNA_632 0.55 +1.6
1,517,295 - 9000 mRNA_632 0.74 -1.5
1,517,439 + 9000 mRNA_632 0.85 -1.5
1,517,459 + 9000 mRNA_632 0.86 -0.9
1,517,588 - -2.0
1,517,755 + +0.1
1,517,885 + +0.9
1,521,004 + +0.1
1,521,144 + +0.3
1,521,289 - 9002 mRNA_634 0.17 -1.9
1,521,441 + 9002 mRNA_634 0.27 +0.8
1,521,595 + 9002 mRNA_634 0.36 +0.2
1,521,605 + 9002 mRNA_634 0.37 +0.3
1,521,731 + 9002 mRNA_634 0.45 +1.3

Or see this region's nucleotide sequence