Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_645

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9012 and 9013 are separated by 453 nucleotides mRNA_644: 9012 - KOG3020 TatD-related DNase, at 1,548,576 to 1,549,928 9012 mRNA_645: 9013 - KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis, at 1,550,382 to 1,551,455 9013

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,549,916 - -0.2
1,549,934 + -0.2
1,549,984 + +1.5
1,550,978 + 9013 mRNA_645 0.55 +1.9
1,551,387 - -0.2
1,551,531 + -0.5
1,551,697 - +0.1
1,551,704 - -1.2
1,551,830 + +0.5
1,551,834 + +0.3
1,551,866 + +2.3
1,551,875 - -0.7
1,551,990 - +2.5
1,551,995 - +1.2
1,552,005 - +2.1
1,552,012 + +0.0
1,552,017 - +0.3
1,552,136 - -0.5
1,552,141 + -0.1
1,552,146 - +0.7
1,552,150 - +0.1
1,552,158 - -1.8
1,552,175 + +1.3
1,552,175 - -0.3
1,552,175 - +0.7
1,552,183 + +0.6
1,552,315 + -0.2
1,552,451 - +0.6

Or see this region's nucleotide sequence