Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_647

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9014 and 9015 are separated by 542 nucleotides9015 and 9016 are separated by 286 nucleotides mRNA_646: 9014 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1,552,967 to 1,555,102 9014 mRNA_647: 9015 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1,555,645 to 1,557,271 9015 mRNA_648: 9016 - K03424 tatD TatD DNase family protein, at 1,557,558 to 1,558,767 9016

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,555,229 - -1.4
1,555,249 - -0.1
1,555,251 + +0.8
1,555,359 - +0.1
1,555,532 - +2.3
1,555,931 + 9015 mRNA_647 0.18 +0.2
1,555,998 - 9015 mRNA_647 0.22 +1.3
1,557,153 + +0.6
1,557,207 + -0.0
1,557,516 + -0.3
1,557,591 + +0.3
1,557,679 + 9016 mRNA_648 0.10 -0.3
1,557,810 + 9016 mRNA_648 0.21 +2.2
1,557,892 + 9016 mRNA_648 0.28 +0.4

Or see this region's nucleotide sequence