Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_673

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9040 and 9041 are separated by 833 nucleotides9041 and 9042 are separated by 574 nucleotides mRNA_672: 9040 - Hypothetical Protein, at 1,620,917 to 1,621,557 9040 mRNA_673: 9041 - BLAST chordin [Novocrania anomala], at 1,622,391 to 1,622,567 9041 mRNA_674: 9042 - K04382 PPP2C serine/threonine-protein phosphatase 2A catalytic subunit, at 1,623,142 to 1,624,836 9042

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,621,757 - +0.9
1,621,949 - +0.2
1,622,142 - +1.1
1,622,202 + -0.2
1,622,477 + 9041 mRNA_673 0.49 +1.3
1,622,606 - -0.1
1,622,627 - -0.5
1,622,640 - +0.3
1,622,642 + -0.3
1,622,649 - +1.7
1,622,756 + -1.1
1,622,765 + -1.2
1,622,776 - +1.1
1,622,790 - -0.9
1,622,922 - -0.8
1,622,925 + -0.6
1,622,928 + +0.5
1,622,942 - +0.1
1,622,949 + +1.2
1,622,952 + +0.2
1,623,079 - -0.5
1,623,091 + +0.6

Or see this region's nucleotide sequence