Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_709

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9077 and 9078 are separated by 102 nucleotides mRNA_709: 9077 - K08775 BRCA2, FANCD1 breast cancer 2 susceptibility protein, at 1,694,399 to 1,698,266 9077 mRNA_710: 9078 - Hypothetical Protein, at 1,698,369 to 1,699,949 9078

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,693,810 - -0.2
1,693,925 - -0.1
1,693,943 + -0.6
1,694,054 - +0.2
1,694,065 - +0.6
1,694,096 + +1.9
1,694,105 - +1.0
1,694,131 + +0.8
1,694,133 - -0.1
1,694,140 - +0.1
1,694,406 + +1.8
1,694,414 - +0.3
1,696,062 + 9077 mRNA_709 0.43 -0.9
1,696,296 + 9077 mRNA_709 0.49 -0.9
1,696,455 + 9077 mRNA_709 0.53 +0.7
1,696,584 + 9077 mRNA_709 0.56 +0.6
1,697,035 + 9077 mRNA_709 0.68 +0.9
1,698,479 - +0.1
1,698,529 + 9078 mRNA_710 0.10 +0.6
1,698,530 + 9078 mRNA_710 0.10 +0.2
1,698,962 - 9078 mRNA_710 0.38 +0.6
1,699,046 + 9078 mRNA_710 0.43 -0.8
1,699,154 - 9078 mRNA_710 0.50 +0.6
1,699,205 + 9078 mRNA_710 0.53 +1.9

Or see this region's nucleotide sequence