Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_774

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9142 and 9143 are separated by 371 nucleotides mRNA_774: 9142 - K17457 PPP1R12C, MBS85 protein phosphatase 1 regulatory subunit 12C, at 1,840,086 to 1,841,880 9142 mRNA_775: 9143 - Hypothetical Protein, at 1,842,252 to 1,843,593 9143

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,839,089 + -0.6
1,839,097 + -0.6
1,839,107 + -1.0
1,839,256 - +0.2
1,839,257 + -1.3
1,839,271 + +0.9
1,839,315 + +0.4
1,839,394 - +0.1
1,839,401 + +0.1
1,839,403 + -0.5
1,839,404 - -0.1
1,839,430 - +0.5
1,839,464 + +0.4
1,839,471 + -0.2
1,839,475 + -0.6
1,839,503 - -0.1
1,839,510 + -0.6
1,839,515 + +0.9
1,839,646 + +0.2
1,839,686 + +0.0
1,840,115 + +0.1
1,840,219 - +0.0
1,840,258 - -0.2
1,840,404 - 9142 mRNA_774 0.18 -1.2
1,841,397 + 9142 mRNA_774 0.73 +0.5
1,841,440 + 9142 mRNA_774 0.75 +0.2
1,841,863 - -0.4
1,842,194 + -0.6
1,842,642 + 9143 mRNA_775 0.29 -0.1
1,842,643 - 9143 mRNA_775 0.29 +0.3
1,842,808 + 9143 mRNA_775 0.41 +0.3

Or see this region's nucleotide sequence