Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_780

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9147 and 9148 are separated by 633 nucleotides9148 and 9149 are separated by 558 nucleotides mRNA_779: 9147 - Hypothetical Protein, at 1,854,108 to 1,855,117 9147 mRNA_780: 9148 - K15172 SUPT5H, SPT5 transcription elongation factor SPT5, at 1,855,751 to 1,860,182 9148 mRNA_781: 9149 - K02910 RP-L31e, RPL31 large subunit ribosomal protein L31e, at 1,860,741 to 1,861,371 9149

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,854,804 - 9147 mRNA_779 0.69 -0.1
1,854,818 - 9147 mRNA_779 0.70 +0.5
1,854,866 + 9147 mRNA_779 0.75 +0.9
1,855,094 - +0.1
1,855,224 + -0.3
1,855,235 + +0.4
1,855,247 - +1.3
1,855,403 - -0.9
1,855,414 - +0.4
1,855,548 - -0.3
1,855,573 - +0.6
1,855,578 + -0.5
1,855,579 + -0.1
1,855,706 + +0.5
1,855,714 - -0.7
1,855,725 - +0.0
1,860,239 + +1.5
1,860,382 + -1.1

Or see this region's nucleotide sequence