Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_784

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9151 and 9152 are separated by 315 nucleotides9152 and 9153 are separated by 513 nucleotides mRNA_783: 9151 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 1,864,111 to 1,866,017 9151 mRNA_784: 9152 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 1,866,333 to 1,867,961 9152 mRNA_785: 9153 - K07305 msrB peptide-methionine (R)-S-oxide reductase, at 1,868,475 to 1,869,401 9153

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,865,368 - 9151 mRNA_783 0.66 -1.2
1,865,399 + 9151 mRNA_783 0.68 -1.2
1,865,798 + 9151 mRNA_783 0.88 -0.4
1,865,810 - 9151 mRNA_783 0.89 -0.2
1,865,839 + -0.3
1,865,972 + -1.0
1,866,044 - -1.2
1,866,096 + -0.3
1,866,106 - -0.5
1,866,552 - 9152 mRNA_784 0.13 +1.5
1,866,553 - 9152 mRNA_784 0.14 -0.3
1,866,555 - 9152 mRNA_784 0.14 +1.2
1,866,559 + 9152 mRNA_784 0.14 +1.7
1,866,974 - 9152 mRNA_784 0.39 -1.5
1,867,426 - 9152 mRNA_784 0.67 +0.1
1,867,466 + 9152 mRNA_784 0.70 +1.1
1,867,548 - 9152 mRNA_784 0.75 +0.5
1,868,185 - -0.3
1,868,439 - -1.2
1,868,740 + 9153 mRNA_785 0.29 +2.2

Or see this region's nucleotide sequence