Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_792

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9159 and 9160 are separated by 676 nucleotides9160 and 9161 are separated by 253 nucleotides mRNA_791: 9159 - HMMPfam-Svf1-like-PF08622,SUPERFAMILY--SSF159245, at 1,880,384 to 1,881,933 9159 mRNA_792: 9160 - SUPERFAMILY--SSF52047, at 1,882,610 to 1,885,727 9160 mRNA_793: 9161 - KOG0374 Serine/threonine specific protein phosphatase PP1, catalytic subunit, at 1,885,981 to 1,887,715 9161

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,881,957 - +2.0
1,882,272 - -0.9
1,882,308 + +0.6
1,882,387 + +0.9
1,882,390 - -0.8
1,882,810 + +0.5
1,883,121 + 9160 mRNA_792 0.16 +0.7
1,883,235 - 9160 mRNA_792 0.20 +2.0
1,883,373 - 9160 mRNA_792 0.24 -1.6
1,883,400 + 9160 mRNA_792 0.25 +0.7
1,883,556 + 9160 mRNA_792 0.30 -0.9
1,883,858 + 9160 mRNA_792 0.40 +0.9
1,884,132 + 9160 mRNA_792 0.49 +1.1
1,884,143 + 9160 mRNA_792 0.49 +1.9
1,884,143 - 9160 mRNA_792 0.49 +1.0
1,884,292 + 9160 mRNA_792 0.54 -0.6
1,884,570 + 9160 mRNA_792 0.63 +0.2
1,884,740 - 9160 mRNA_792 0.68 -0.7
1,884,992 + 9160 mRNA_792 0.76 -1.4
1,885,019 + 9160 mRNA_792 0.77 -0.3
1,885,152 + 9160 mRNA_792 0.82 +0.4
1,885,160 - 9160 mRNA_792 0.82 -0.3
1,885,469 + -0.1
1,885,499 - +1.0
1,885,579 - +1.1
1,885,601 - +0.9
1,885,733 + +0.7
1,885,752 - +1.0
1,885,762 - -0.7
1,885,930 + +0.9
1,886,015 - +0.3
1,886,051 - +0.0
1,886,053 + -0.5
1,886,053 + +0.3
1,886,070 + -0.8
1,886,216 + 9161 mRNA_793 0.14 -0.0

Or see this region's nucleotide sequence