Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_871

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9238 and 9239 are separated by 271 nucleotides9239 and 9240 are separated by 19 nucleotides mRNA_870: 9238 - KOG0679 Actin-related protein - Arp4p/Act3p, at 2,078,239 to 2,080,203 9238 mRNA_871: 9239 - BLAST lanosterol synthase [Microbotryum lychnidis-dioicae p..., at 2,080,475 to 2,080,915 9239 mRNA_872: 9240 - K01852 LSS, ERG7 lanosterol synthase, at 2,080,935 to 2,083,844 9240

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,080,251 - +3.2
2,080,406 + +0.8

Or see this region's nucleotide sequence