Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_878

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9245 and 9246 are separated by 357 nucleotides mRNA_877: 9245 - K07425 CYP4A alkane 1-monooxygenase, at 2,092,667 to 2,095,053 9245 mRNA_878: 9246 - K14692 SLC30A5_7, ZNT5_7, MTP, MSC2 solute carrier family 30 (zinc transporter), member 5/7, at 2,095,411 to 2,098,626 9246

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,094,626 - 9245 mRNA_877 0.82 -0.6
2,094,771 - 9245 mRNA_877 0.88 +0.8
2,095,005 + +0.4
2,095,042 + +0.6
2,095,197 + -0.4
2,095,329 + +1.4
2,095,329 + +1.1
2,095,330 + -0.3
2,095,364 + +0.0
2,095,490 - +0.0
2,095,493 + +0.3
2,095,497 + +0.4
2,095,503 - +1.8
2,095,634 + +0.4
2,095,774 - 9246 mRNA_878 0.11 -0.9
2,095,774 - 9246 mRNA_878 0.11 -0.8
2,096,219 - 9246 mRNA_878 0.25 +0.4
2,096,221 + 9246 mRNA_878 0.25 -0.7
2,096,541 + 9246 mRNA_878 0.35 +0.5
2,096,855 - 9246 mRNA_878 0.45 -0.0
2,096,927 - 9246 mRNA_878 0.47 -0.2
2,096,953 + 9246 mRNA_878 0.48 -0.2
2,096,982 + 9246 mRNA_878 0.49 -0.3
2,096,988 - 9246 mRNA_878 0.49 -0.5
2,097,146 - 9246 mRNA_878 0.54 -0.6
2,097,421 + 9246 mRNA_878 0.62 +0.2
2,097,705 - 9246 mRNA_878 0.71 +0.7
2,097,841 + 9246 mRNA_878 0.76 +0.8
2,097,861 + 9246 mRNA_878 0.76 +0.7
2,097,994 + 9246 mRNA_878 0.80 +0.9
2,098,435 + +0.1
2,098,451 + +1.0
2,098,453 - +0.6
2,098,478 + +1.1
2,098,555 + +1.1
2,098,562 - +0.4
2,098,578 - +0.9
2,098,602 + -1.0
2,098,604 - +2.8
2,098,607 + +0.6
2,098,619 + -0.0
2,098,674 - +1.1
2,098,677 + +0.4
2,098,694 + -0.4
2,098,702 - +3.0
2,098,703 + +0.2
2,098,711 + +0.9
2,098,715 + +1.1
2,098,721 - -0.6
2,098,734 + +1.9
2,098,734 - +0.3
2,098,734 - +1.9
2,098,735 + -0.9
2,098,735 + +0.1
2,098,737 - -0.1
2,098,738 - +0.2
2,098,741 + -0.7
2,098,741 + +1.3
2,098,743 - -0.3
2,098,746 - -0.7
2,098,747 + +0.7
2,098,754 + -0.3
2,098,759 - +1.1
2,098,759 - -0.2
2,098,759 - -0.6
2,098,759 + +0.3
2,098,761 - +1.6
2,098,762 + +0.2
2,098,762 + +2.4
2,098,763 - +0.5
2,098,766 + +0.5
2,098,769 - -0.3
2,098,769 - -0.3
2,098,776 - +0.1
2,098,778 - +2.8
2,098,782 - +1.7
2,098,784 + +0.5
2,098,793 + +0.3
2,098,801 - +1.0
2,098,802 + +0.4
2,098,803 - +0.9
2,098,805 - -1.0
2,098,809 - +0.6
2,098,811 + +0.8
2,098,813 + -1.2
2,098,818 - +1.5
2,098,819 + +0.9
2,098,822 - +1.1
2,098,822 - +0.7
2,098,824 + +0.1
2,098,824 - -0.3
2,098,824 - -0.3
2,098,828 - +0.6
2,098,830 + +0.2
2,098,831 - -0.2
2,098,831 - +1.5
2,098,832 + -0.4
2,098,833 - -0.1
2,098,854 - +1.4
2,098,859 + +0.0
2,098,862 + +0.6
2,098,899 - +0.0
2,098,900 - +0.1
2,098,903 + +1.9
2,098,904 - -1.1
2,098,908 + +1.1
2,099,023 - +0.7
2,099,028 - +0.1
2,099,030 + -3.3
2,099,035 + -0.2
2,099,041 - +0.7
2,099,042 + -0.5
2,099,042 + +1.4
2,099,042 - -0.6
2,099,045 - -0.6
2,099,048 - -0.0
2,099,049 + -0.2
2,099,055 + +0.2
2,099,059 + +0.8
2,099,064 - -0.0
2,099,064 - +0.8
2,099,067 + +0.0
2,099,070 - -0.2
2,099,089 - -0.5
2,099,114 - +0.2
2,099,116 - -0.1
2,099,127 + +0.6
2,099,129 - -0.2
2,099,146 - +0.1
2,099,156 + +0.0
2,099,159 - -1.5
2,099,165 - +1.3
2,099,169 - +0.2
2,099,171 - +0.7
2,099,171 - +0.5
2,099,177 - -0.8
2,099,178 - -0.8
2,099,189 + -2.0
2,099,193 + +0.3
2,099,207 - -0.6
2,099,218 + +0.0
2,099,219 - -0.7
2,099,220 + +1.7
2,099,222 - +0.1
2,099,225 + +0.8
2,099,235 - +0.8
2,099,237 + +0.8
2,099,243 - +0.1
2,099,244 + +1.5
2,099,247 + +1.1
2,099,249 + -0.2
2,099,294 - +2.2
2,099,305 - -0.3
2,099,308 + -0.8
2,099,309 + +0.2
2,099,314 - +0.3
2,099,332 + +1.6
2,099,332 - +0.7
2,099,351 - +1.5
2,099,356 + +1.7
2,099,365 + -0.3
2,099,380 - +0.1
2,099,380 - +0.2
2,099,382 - +1.0
2,099,384 - +0.9
2,099,385 + +0.0
2,099,387 + -0.7
2,099,389 - +0.3
2,099,392 - -0.9
2,099,392 + -0.6
2,099,396 + +0.2
2,099,398 + +1.5
2,099,404 - +0.0
2,099,405 + -0.4
2,099,413 - -0.1
2,099,417 + -0.6
2,099,418 + +1.0
2,099,420 - -0.6
2,099,425 - +0.4
2,099,426 + +0.1
2,099,428 + +0.3
2,099,432 + +0.1
2,099,435 - +0.3
2,099,440 - -1.3
2,099,441 - +0.5
2,099,441 - +1.7
2,099,446 - -0.4
2,099,449 + -0.5
2,099,461 - +0.3
2,099,466 - +0.4
2,099,472 + +0.6
2,099,484 - -1.8
2,099,486 + -0.3
2,099,487 + -0.8
2,099,488 - +0.8
2,099,489 + -0.7
2,099,520 + +0.2
2,099,532 - +0.3
2,099,545 + +0.4
2,099,555 - -0.6
2,099,563 - +0.5
2,099,565 + +0.6
2,099,566 + +2.3
2,099,566 - +0.1
2,099,571 - +0.2
2,099,574 + -1.1
2,099,575 - +1.4
2,099,575 + -0.4
2,099,576 - +0.3
2,099,580 + -0.9
2,099,582 + +1.8
2,099,584 + -0.3
2,099,587 - +0.2
2,099,598 - -0.9
2,099,599 - +2.3
2,099,600 + +0.9
2,099,603 - +0.7
2,099,612 - -1.9
2,099,613 + +1.2
2,099,620 - +1.0
2,099,621 - +0.7
2,099,622 + +0.5

Or see this region's nucleotide sequence