Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_893

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9261 and 9262 are separated by 350 nucleotides mRNA_893: 9261 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 2,133,500 to 2,134,793 9261 mRNA_894: 9262 - K01694 TRP tryptophan synthase, at 2,135,144 to 2,138,242 9262

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,132,504 - -0.3
2,132,518 + -0.5
2,132,519 - +0.1
2,132,651 - +0.1
2,132,840 + -0.3
2,133,108 + +1.5
2,133,247 - +2.2
2,133,263 + -0.9
2,133,265 + -0.6
2,133,322 + -0.0
2,133,332 + +0.7
2,133,350 - +0.8
2,133,364 - +0.3
2,133,368 + -0.2
2,133,371 - +0.6
2,133,372 - -0.0
2,133,396 + -0.3
2,133,422 + +0.9
2,133,422 + -1.3
2,133,423 + -0.2
2,133,434 + +0.6
2,133,597 + -0.5
2,133,861 - 9261 mRNA_893 0.28 -0.8
2,133,973 - 9261 mRNA_893 0.37 +0.1
2,134,024 + 9261 mRNA_893 0.40 -0.9
2,134,276 - 9261 mRNA_893 0.60 +0.0
2,134,440 + 9261 mRNA_893 0.73 +0.5
2,134,555 - 9261 mRNA_893 0.82 -0.4
2,134,738 - +0.8
2,134,745 + +0.2
2,134,891 - +0.5
2,135,049 + -0.2
2,135,052 - -0.0
2,135,054 + -0.2
2,135,056 - -0.2
2,135,059 + +0.8
2,135,061 + +1.3
2,135,063 - -1.0
2,135,065 + +0.0
2,135,077 - -0.4
2,135,085 + +0.3

Or see this region's nucleotide sequence