Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_900

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9267 and 9268 are separated by 96 nucleotides9268 and 9269 are separated by 176 nucleotides mRNA_899: 9267 - K00486 KMO kynurenine 3-monooxygenase, at 2,144,994 to 2,146,885 9267 mRNA_900: 9268 - SUPERFAMILY--SSF52266, at 2,146,982 to 2,149,051 9268 mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2,149,228 to 2,151,284 9269

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,146,028 + 9267 mRNA_899 0.55 +1.6
2,146,063 - 9267 mRNA_899 0.57 +0.3
2,146,215 + 9267 mRNA_899 0.65 +1.2
2,146,744 - -0.3
2,146,772 - +0.3
2,146,807 + +0.5
2,146,934 - +0.1
2,147,033 - +1.9
2,147,092 - +1.0
2,147,191 + 9268 mRNA_900 0.10 +0.2
2,147,382 + 9268 mRNA_900 0.19 +0.4
2,147,407 + 9268 mRNA_900 0.21 +1.3
2,147,479 - 9268 mRNA_900 0.24 +0.1
2,147,680 + 9268 mRNA_900 0.34 +0.5
2,147,745 + 9268 mRNA_900 0.37 +2.6
2,147,941 - 9268 mRNA_900 0.46 +0.5
2,148,099 + 9268 mRNA_900 0.54 +0.8
2,148,133 + 9268 mRNA_900 0.56 +0.0
2,148,254 - 9268 mRNA_900 0.61 +0.9
2,148,524 - 9268 mRNA_900 0.74 +1.1
2,148,549 - 9268 mRNA_900 0.76 +0.3
2,148,673 + 9268 mRNA_900 0.82 +1.2
2,148,676 - 9268 mRNA_900 0.82 -0.2
2,148,687 - 9268 mRNA_900 0.82 -1.0
2,148,843 + 9268 mRNA_900 0.90 -0.9
2,148,981 - +0.1
2,149,000 + +1.5
2,149,025 + +1.8
2,149,131 + -0.6
2,149,134 - -0.4
2,149,143 + -1.5
2,149,147 + -0.2
2,149,148 - -0.6
2,149,152 + +0.1
2,149,189 - +1.7
2,149,191 + -0.1
2,149,198 + +0.3
2,149,208 - -2.2
2,149,269 + -0.2
2,149,272 + +1.7
2,149,301 - +0.8
2,149,301 - +1.4
2,149,305 - +0.3
2,149,313 + -0.8
2,149,390 - +1.5
2,149,429 + +2.2
2,149,442 - 9269 mRNA_901 0.10 +1.9
2,149,638 + 9269 mRNA_901 0.20 -0.1
2,149,715 - 9269 mRNA_901 0.24 -0.2
2,149,894 + 9269 mRNA_901 0.32 -1.7
2,149,927 - 9269 mRNA_901 0.34 +1.2
2,150,050 + 9269 mRNA_901 0.40 +0.7

Or see this region's nucleotide sequence