Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_918

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9285 and 9286 are separated by 274 nucleotides9286 and 9287 are separated by 166 nucleotides mRNA_917: 9285 - Hypothetical Protein, at 2,190,561 to 2,191,088 9285 mRNA_918: 9286 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 2,191,363 to 2,192,706 9286 mRNA_919: 9287 - KOG1397 Ca2+/H+ antiporter VCX1 and related proteins, at 2,192,873 to 2,195,509 9287

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,190,386 - +0.2
2,190,410 + +1.0
2,190,528 - -0.0
2,190,533 + +1.2
2,190,701 - 9285 mRNA_917 0.27 +1.0
2,190,704 + 9285 mRNA_917 0.27 -0.1
2,190,714 + 9285 mRNA_917 0.29 +0.6
2,190,714 - 9285 mRNA_917 0.29 +0.8
2,190,719 - 9285 mRNA_917 0.30 -0.5
2,190,721 + 9285 mRNA_917 0.30 -1.4
2,190,748 + 9285 mRNA_917 0.35 -0.0
2,190,768 - 9285 mRNA_917 0.39 -0.4
2,190,854 - 9285 mRNA_917 0.55 +0.6
2,191,008 + 9285 mRNA_917 0.85 +0.1
2,191,018 - 9285 mRNA_917 0.87 +1.5
2,191,048 + +0.4
2,191,135 - +0.4
2,191,190 + +1.7
2,191,210 - +1.0
2,191,214 - +1.4
2,191,215 - +0.3
2,191,297 - -1.7
2,191,318 + +1.0
2,191,337 - -0.2
2,191,395 + +1.0
2,191,395 + +0.2
2,191,400 + -1.1
2,191,403 - -0.3
2,191,776 + 9286 mRNA_918 0.31 +0.4
2,191,818 - 9286 mRNA_918 0.34 -1.2
2,191,894 + 9286 mRNA_918 0.40 +1.1
2,191,910 - 9286 mRNA_918 0.41 -1.0
2,191,932 + 9286 mRNA_918 0.42 +1.4
2,191,962 + 9286 mRNA_918 0.45 +1.7
2,191,992 - 9286 mRNA_918 0.47 +0.8
2,192,034 - 9286 mRNA_918 0.50 +0.1
2,192,059 - 9286 mRNA_918 0.52 -0.4
2,192,243 + 9286 mRNA_918 0.65 -1.2
2,192,540 + 9286 mRNA_918 0.88 -1.0
2,193,170 - 9287 mRNA_919 0.11 -0.0
2,193,234 + 9287 mRNA_919 0.14 +0.2
2,193,237 - 9287 mRNA_919 0.14 +1.0
2,193,297 + 9287 mRNA_919 0.16 -1.4
2,193,404 - 9287 mRNA_919 0.20 -0.2
2,193,490 + 9287 mRNA_919 0.23 +1.5
2,193,644 - 9287 mRNA_919 0.29 +2.0

Or see this region's nucleotide sequence