Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_939

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9307 and 9308 are separated by 233 nucleotides mRNA_939: 9307 - Hypothetical Protein, at 23,746 to 25,185 9307 mRNA_940: 9308 - Hypothetical Protein, at 25,419 to 26,964 9308

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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22,914 - -0.8
22,920 - +1.5
22,925 + -0.1
22,928 + -0.2
22,947 - -0.6
23,066 + +1.5
23,068 + -0.9
23,157 + -0.1
23,189 - -0.4
23,215 - +1.2
23,216 + +0.0
23,216 + -0.3
23,373 + -0.4
23,374 - -1.5
23,379 - -0.7
23,385 + -1.5
23,406 + +0.4
23,475 - +1.5
23,482 + -0.5
23,528 - +0.2
23,534 + +0.5
23,647 + +0.9
23,753 + -0.9
23,774 - +0.5
23,963 - 9307 mRNA_939 0.15 +1.3
23,985 - 9307 mRNA_939 0.17 +0.7
24,006 - 9307 mRNA_939 0.18 +0.1
24,048 + 9307 mRNA_939 0.21 +1.6
24,054 + 9307 mRNA_939 0.21 +1.5
24,106 + 9307 mRNA_939 0.25 -0.1
24,151 - 9307 mRNA_939 0.28 +0.1
24,218 + 9307 mRNA_939 0.33 +0.5
24,394 + 9307 mRNA_939 0.45 +2.0
24,408 - 9307 mRNA_939 0.46 -0.1
24,487 + 9307 mRNA_939 0.51 +0.1
24,538 - 9307 mRNA_939 0.55 +1.6
24,633 + 9307 mRNA_939 0.62 +1.3
24,682 - 9307 mRNA_939 0.65 +2.9
24,763 + 9307 mRNA_939 0.71 +1.0
24,807 + 9307 mRNA_939 0.74 +1.0
24,928 + 9307 mRNA_939 0.82 +1.4
24,976 - 9307 mRNA_939 0.85 +1.0
25,080 - -0.5
25,109 - +1.1
25,206 + +0.3
25,346 - -0.2
25,350 + -2.3
25,432 + +2.2
25,445 + +1.0
25,484 - +2.7
25,486 - +1.2
25,492 + +1.0
25,673 - 9308 mRNA_940 0.16 +0.5
25,673 - 9308 mRNA_940 0.16 +0.3
25,709 - 9308 mRNA_940 0.19 +1.0
25,836 + 9308 mRNA_940 0.27 +1.1
25,839 - 9308 mRNA_940 0.27 +0.5
25,876 - 9308 mRNA_940 0.30 -0.2
26,089 - 9308 mRNA_940 0.43 -0.4
26,104 + 9308 mRNA_940 0.44 -0.0
26,116 + 9308 mRNA_940 0.45 +0.7

Or see this region's nucleotide sequence