Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_986

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9353 and 9354 are separated by 749 nucleotides9354 and 9355 are separated by 534 nucleotides mRNA_985: 9353 - K14399 CLP1, HERB polyribonucleotide 5'-hydroxyl-kinase, at 133,599 to 135,746 9353 mRNA_986: 9354 - K03781 katE, CAT, catB, srpA catalase, at 136,496 to 139,711 9354 mRNA_987: 9355 - K04773 sppA protease IV, at 140,246 to 143,358 9355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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135,868 + +0.6
136,018 + +0.1
136,019 - +1.3
136,038 + -0.4
136,084 - +0.3
136,094 - +1.4
136,095 + -0.3
136,099 + +0.8
136,099 - +0.5
136,100 - -0.6
136,103 + +0.3
136,103 + +2.2
136,115 - -0.2
136,119 - -0.7
136,122 - +1.8
136,123 - -1.5
136,146 + +2.1
136,148 - +1.8
136,153 + +0.7
136,161 - -0.2
136,161 - -0.2
136,172 - -0.3
136,176 + -0.5
136,190 - +0.3
136,222 - -0.2
136,303 + +0.4
136,303 + +0.2
136,311 - +0.4
136,315 + -0.6
136,343 + +0.3
136,882 - 9354 mRNA_986 0.12 +1.4
137,323 - 9354 mRNA_986 0.26 +0.8
137,358 + 9354 mRNA_986 0.27 +0.7
137,630 + 9354 mRNA_986 0.35 +0.5
137,803 - 9354 mRNA_986 0.41 +0.8
137,816 - 9354 mRNA_986 0.41 +1.1
137,895 + 9354 mRNA_986 0.44 +1.2
138,197 + 9354 mRNA_986 0.53 -0.5
138,276 + 9354 mRNA_986 0.55 +0.8
138,445 - 9354 mRNA_986 0.61 +0.7
138,529 - 9354 mRNA_986 0.63 +3.1
138,538 + 9354 mRNA_986 0.63 +0.0
138,548 - 9354 mRNA_986 0.64 -0.4
138,710 + 9354 mRNA_986 0.69 +0.1
138,838 + 9354 mRNA_986 0.73 +0.0
138,981 - 9354 mRNA_986 0.77 +0.1
139,136 + 9354 mRNA_986 0.82 -0.5
139,230 + 9354 mRNA_986 0.85 +0.3
139,372 + 9354 mRNA_986 0.89 -0.6
139,377 + 9354 mRNA_986 0.90 -0.1
139,418 - +1.8
139,569 + -0.2
139,737 + -0.6
140,164 + -1.9
140,186 + +0.3
140,384 - -0.9

Or see this region's nucleotide sequence