Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_992

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9359 and 9360 are separated by 378 nucleotides mRNA_991: 9359 - HMMPfam-Uncharacterised protein family, YAP/Alf4/glomulin-PF08568, at 147,829 to 149,137 9359 mRNA_992: 9360 - HMMPfam-OPT oligopeptide transporter protein-PF03169, at 149,516 to 150,268 9360

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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149,163 + +0.1
149,435 + +1.2
150,154 + 9360 mRNA_992 0.85 -0.0
150,158 - 9360 mRNA_992 0.85 +0.3
150,315 + +0.3
150,318 + -0.2
150,613 + +1.2

Or see this region's nucleotide sequence