Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_993

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9361 and 9362 are separated by 704 nucleotides mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151,634 to 153,360 9361 mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154,065 to 154,836 9362

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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152,336 - 9361 mRNA_993 0.41 +0.5
152,532 - 9361 mRNA_993 0.52 +2.4
152,682 + 9361 mRNA_993 0.61 +0.5
152,754 - 9361 mRNA_993 0.65 +0.8
152,775 + 9361 mRNA_993 0.66 +1.7
152,790 + 9361 mRNA_993 0.67 +0.2
152,794 + 9361 mRNA_993 0.67 +2.8
152,807 - 9361 mRNA_993 0.68 +0.1
152,859 + 9361 mRNA_993 0.71 -0.1
152,951 - 9361 mRNA_993 0.76 +1.1
152,978 + 9361 mRNA_993 0.78 +0.1
152,982 + 9361 mRNA_993 0.78 +0.0
152,992 + 9361 mRNA_993 0.79 +0.1
153,130 - 9361 mRNA_993 0.87 +1.1
153,135 - 9361 mRNA_993 0.87 +1.1
153,155 - 9361 mRNA_993 0.88 -1.3
153,232 - +1.8
153,251 + +1.2
153,277 - +0.2
153,285 - +0.2
153,286 + +0.0
153,305 - +0.3
153,309 + +1.0
153,341 + +0.0
153,435 - -1.2
153,442 + +1.4
153,454 + -0.5
153,467 - +0.3
153,470 + +0.0
153,482 + -0.5
153,488 - +0.6
153,489 - +1.0
153,490 - +1.8
153,490 - +1.0
153,528 + -0.2
153,546 - +0.7
153,578 + +1.1
153,598 - -0.8
153,685 + +0.1
153,750 - +0.9
153,877 + +0.7
153,998 + +1.6
154,033 + -1.0
154,080 - +0.7
154,093 + +0.1
154,180 - 9362 mRNA_994 0.15 +1.4

Or see this region's nucleotide sequence