Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_994

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9361 and 9362 are separated by 704 nucleotides9362 and 9363 are separated by 676 nucleotides mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151,634 to 153,360 9361 mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154,065 to 154,836 9362 mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155,513 to 160,267 9363

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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153,130 - 9361 mRNA_993 0.87 +1.1
153,135 - 9361 mRNA_993 0.87 +1.1
153,155 - 9361 mRNA_993 0.88 -1.3
153,232 - +1.8
153,251 + +1.2
153,277 - +0.2
153,285 - +0.2
153,286 + +0.0
153,305 - +0.3
153,309 + +1.0
153,341 + +0.0
153,435 - -1.2
153,442 + +1.4
153,454 + -0.5
153,467 - +0.3
153,470 + +0.0
153,482 + -0.5
153,488 - +0.6
153,489 - +1.0
153,490 - +1.8
153,490 - +1.0
153,528 + -0.2
153,546 - +0.7
153,578 + +1.1
153,598 - -0.8
153,685 + +0.1
153,750 - +0.9
153,877 + +0.7
153,998 + +1.6
154,033 + -1.0
154,080 - +0.7
154,093 + +0.1
154,180 - 9362 mRNA_994 0.15 +1.4
154,594 - 9362 mRNA_994 0.69 -0.4
154,735 - 9362 mRNA_994 0.87 +0.1
154,886 + +0.9
154,888 - -0.1
154,900 + +0.0
155,039 + -0.3
155,041 + -1.3
155,069 - -0.5
155,069 + -0.1
155,186 - -0.7
155,207 - +0.2
155,209 + -0.7
155,212 - -0.6
155,217 + +0.4
155,221 + -0.3
155,225 + +0.1
155,260 + -0.3
155,469 - -0.3

Or see this region's nucleotide sequence