Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_998

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9365 and 9366 are separated by 245 nucleotides9366 and 9367 are separated by 183 nucleotides mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164,007 to 168,056 9365 mRNA_998: 9366 - Hypothetical Protein, at 168,302 to 169,013 9366 mRNA_999: 9367 - HMMPfam-PAPA-1-like conserved region-PF04795, at 169,197 to 171,213 9367

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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167,457 - 9365 mRNA_997 0.85 -0.1
167,457 + 9365 mRNA_997 0.85 -0.0
167,633 - 9365 mRNA_997 0.90 -0.7
167,749 - +1.4
167,874 - +0.2
167,887 + -1.9
167,909 - +0.3
168,020 + +0.2
168,057 + -1.1
168,072 + -0.2
168,086 + -0.2
168,514 - 9366 mRNA_998 0.30 +0.1
168,644 + 9366 mRNA_998 0.48 +1.5
168,669 - 9366 mRNA_998 0.52 +1.0
169,094 - -0.1
169,254 + -0.5
169,859 - 9367 mRNA_999 0.33 -1.0

Or see this region's nucleotide sequence