Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1024

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9391 and 9392 are separated by 428 nucleotides9392 and 9393 are separated by 794 nucleotides mRNA_1023: 9391 - K08272 CAB39, MO25 calcium binding protein 39, at 228,517 to 230,203 9391 mRNA_1024: 9392 - HMMPfam-Thaumatin family-PF00314,PIRSF--PIRSF002703,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 230,632 to 231,986 9392 mRNA_1025: 9393 - BLAST MIND kinetochore complex component Nnf1 [Trichophyton..., at 232,781 to 233,762 9393

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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230,212 - +1.8
230,354 + -0.3
230,464 - +1.4
230,495 - +0.1
230,510 - -0.3
230,890 + 9392 mRNA_1024 0.19 +1.9
230,901 + 9392 mRNA_1024 0.20 -0.8
231,023 - 9392 mRNA_1024 0.29 +0.1
231,044 - 9392 mRNA_1024 0.30 +1.3
231,064 + 9392 mRNA_1024 0.32 +1.0
231,445 - 9392 mRNA_1024 0.60 +1.2
231,807 - 9392 mRNA_1024 0.87 +1.8
231,868 + -0.2
231,910 + +1.6
232,090 - +1.5
232,144 + +0.6
232,435 - -0.6
232,447 + +0.3
232,472 - +0.7
232,474 - -0.4
232,502 - +0.4
232,616 - -0.4
232,642 + -0.6
232,779 - -0.3
232,822 + -0.3

Or see this region's nucleotide sequence