Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1025

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9392 and 9393 are separated by 794 nucleotides9393 and 9394 are separated by 181 nucleotides mRNA_1024: 9392 - HMMPfam-Thaumatin family-PF00314,PIRSF--PIRSF002703,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 230,632 to 231,986 9392 mRNA_1025: 9393 - BLAST MIND kinetochore complex component Nnf1 [Trichophyton..., at 232,781 to 233,762 9393 mRNA_1026: 9394 - HMMPfam-Protein of unknown function (DUF3317)-PF11779, at 233,944 to 234,631 9394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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231,807 - 9392 mRNA_1024 0.87 +1.8
231,868 + -0.2
231,910 + +1.6
232,090 - +1.5
232,144 + +0.6
232,435 - -0.6
232,447 + +0.3
232,472 - +0.7
232,474 - -0.4
232,502 - +0.4
232,616 - -0.4
232,642 + -0.6
232,779 - -0.3
232,822 + -0.3
233,809 - +1.1
233,815 - -0.2
233,820 + -0.9
233,822 + +0.4
233,825 - -0.2
233,825 - +0.2
233,839 - -0.6
233,843 - +1.0
233,846 + +1.2
233,851 + +0.0
233,874 + +0.5
233,945 - +2.3
233,954 - -1.3
233,965 - +1.5
233,971 - +0.5
233,974 - -0.9
233,974 + +1.9
233,986 - +0.8
233,986 - +0.9
234,056 - 9394 mRNA_1026 0.16 +0.8
234,127 + 9394 mRNA_1026 0.27 -0.1
234,130 - 9394 mRNA_1026 0.27 +0.4

Or see this region's nucleotide sequence