Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1031

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9399 and 9400 are separated by 766 nucleotides mRNA_1031: 9399 - Hypothetical Protein, at 243,665 to 244,261 9399 mRNA_1032: 9400 - Hypothetical Protein, at 245,028 to 245,336 9400

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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242,903 - +1.9
242,932 + +1.1
243,494 - +0.3
243,623 - +2.3
243,626 + -0.7
243,692 + +0.4
243,773 - 9399 mRNA_1031 0.18 -0.9
243,995 - 9399 mRNA_1031 0.55 -0.9
244,184 + 9399 mRNA_1031 0.87 +3.0
244,251 + +0.9
244,270 + +1.0
244,296 + +0.4
244,379 - +1.3
244,470 + +0.6
244,515 + +1.5
244,528 - +2.1
244,541 - -0.2
244,543 - -0.0
244,847 + -0.2
244,987 + -2.1
244,992 + -0.6
244,994 + +0.6
244,995 - +0.3
245,246 - 9400 mRNA_1032 0.71 -0.7

Or see this region's nucleotide sequence