Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1046

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9414 and 9415 are separated by 413 nucleotides mRNA_1046: 9414 - K11346 ING4 inhibitor of growth protein 4, at 270,342 to 271,774 9414 mRNA_1047: 9415 - K19054 FXN frataxin, at 272,188 to 272,699 9415

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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270,206 - +0.7
270,211 + -0.4
270,216 + -0.4
270,227 + +2.2
270,229 + -0.4
270,357 + +0.1
270,377 + -0.1
270,508 + 9414 mRNA_1046 0.12 +1.9
270,517 + 9414 mRNA_1046 0.12 +1.0
270,611 + 9414 mRNA_1046 0.19 +2.6
270,616 + 9414 mRNA_1046 0.19 +1.0
270,643 - 9414 mRNA_1046 0.21 +3.1
270,660 + 9414 mRNA_1046 0.22 -0.2
270,672 + 9414 mRNA_1046 0.23 +1.2
271,079 + 9414 mRNA_1046 0.51 +1.3
271,188 + 9414 mRNA_1046 0.59 -1.8
271,214 - 9414 mRNA_1046 0.61 +1.0
271,234 + 9414 mRNA_1046 0.62 +2.4
271,240 + 9414 mRNA_1046 0.63 -0.0
271,279 - 9414 mRNA_1046 0.65 +0.7
271,502 - 9414 mRNA_1046 0.81 -1.6
271,661 - +1.6
271,664 + +2.4
271,756 - +0.2
271,786 + +2.6
271,803 - +0.4
271,804 - +0.3
271,805 + -1.4
271,805 + +1.2
271,808 - +0.7
271,811 - -0.5
271,832 + -0.1

Or see this region's nucleotide sequence