Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1075

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9442 and 9443 are separated by 184 nucleotides9443 and 9444 are separated by 248 nucleotides mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346,068 to 346,985 9442 mRNA_1075: 9443 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 347,170 to 348,411 9443 mRNA_1076: 9444 - K02324 POLE1 DNA polymerase epsilon subunit 1, at 348,660 to 356,355 9444

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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346,283 - 9442 mRNA_1074 0.23 +3.2
346,320 - 9442 mRNA_1074 0.27 -1.4
346,326 + 9442 mRNA_1074 0.28 -0.5
346,327 - 9442 mRNA_1074 0.28 +0.2
346,496 + 9442 mRNA_1074 0.47 +1.3
346,944 + +0.2
346,944 + +0.8
347,065 - -1.3
347,092 + +0.1
347,100 - +0.9
347,206 - -0.2
347,213 + +0.3
347,229 + -0.2
347,238 + -0.2
347,242 + -0.2
347,243 - +0.3
347,247 + -0.3
347,247 + -0.4
347,247 - -0.4
347,248 - -0.4
347,271 + +2.6
347,418 - 9443 mRNA_1075 0.20 +0.0
347,527 - 9443 mRNA_1075 0.29 -0.2
347,570 - 9443 mRNA_1075 0.32 -0.3
347,683 - 9443 mRNA_1075 0.41 +0.1
347,694 - 9443 mRNA_1075 0.42 +0.0
347,980 - 9443 mRNA_1075 0.65 +0.2
348,168 + 9443 mRNA_1075 0.80 -0.8
348,276 + 9443 mRNA_1075 0.89 +2.5
348,383 + +1.0
348,414 - +0.6
348,443 + +0.8
348,464 - +1.2
348,476 - +0.7
348,495 + +1.9
348,520 - -0.1
348,621 + +1.3
348,691 - +0.2

Or see this region's nucleotide sequence