Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1093

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9460 and 9461 are separated by 70 nucleotides mRNA_1092: 9460 - SUPERFAMILY--SSF52833, at 388,491 to 389,761 9460 mRNA_1093: 9461 - K08734 MLH1 DNA mismatch repair protein MLH1, at 389,832 to 392,680 9461

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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388,880 - 9460 mRNA_1092 0.31 +0.1
388,904 + 9460 mRNA_1092 0.32 +0.0
388,931 - 9460 mRNA_1092 0.35 +1.9
389,031 - 9460 mRNA_1092 0.42 -1.1
389,094 - 9460 mRNA_1092 0.47 +0.4
389,183 - 9460 mRNA_1092 0.54 -1.0
389,218 + 9460 mRNA_1092 0.57 -0.2
389,218 + 9460 mRNA_1092 0.57 +1.6
389,242 - 9460 mRNA_1092 0.59 -0.1
389,295 - 9460 mRNA_1092 0.63 +1.5
389,333 - 9460 mRNA_1092 0.66 -0.6
389,897 - +0.3
390,079 + +0.9
390,215 - 9461 mRNA_1093 0.13 +0.0
390,324 - 9461 mRNA_1093 0.17 -0.1
390,344 + 9461 mRNA_1093 0.18 -0.2
390,548 - 9461 mRNA_1093 0.25 +0.8
390,621 - 9461 mRNA_1093 0.28 -0.9
390,624 - 9461 mRNA_1093 0.28 -0.7
390,648 + 9461 mRNA_1093 0.29 +2.3
390,930 - 9461 mRNA_1093 0.39 +0.1
390,991 + 9461 mRNA_1093 0.41 -0.1
391,214 + 9461 mRNA_1093 0.49 -0.3
391,350 + 9461 mRNA_1093 0.53 -0.1
391,515 + 9461 mRNA_1093 0.59 -0.7
391,793 + 9461 mRNA_1093 0.69 +2.0
391,949 + 9461 mRNA_1093 0.74 -0.4
391,961 + 9461 mRNA_1093 0.75 -0.3
392,074 - 9461 mRNA_1093 0.79 +0.3
392,114 + 9461 mRNA_1093 0.80 -0.5
392,241 - 9461 mRNA_1093 0.85 +2.0
392,335 + 9461 mRNA_1093 0.88 +0.1
392,385 - 9461 mRNA_1093 0.90 -0.0
392,407 - +0.2
392,544 - -2.0
392,553 + +2.6
392,847 + +0.6
392,873 + +0.2
392,898 - +2.3
393,027 - -1.0
393,121 + +0.7
393,143 - -0.1
393,145 - +0.7
393,149 - -0.2
393,182 - +0.7
393,271 - +0.3
393,292 + +1.6
393,297 - -1.0
393,302 - -0.3
393,303 + +0.1
393,307 + +0.1
393,335 + -1.1
393,440 + +1.1
393,443 + -0.2
393,447 + +0.4
393,461 + +2.1
393,543 - +0.4
393,549 - +0.1
393,552 + +0.2
393,577 + +0.6
393,578 + +1.2
393,579 - +0.6
393,589 - -0.4
393,597 + -0.2
393,612 - +0.4
393,618 + -0.8
393,622 + +0.4

Or see this region's nucleotide sequence