Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1138

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9505 and 9506 are separated by 462 nucleotides9506 and 9507 are separated by 556 nucleotides mRNA_1137: 9505 - KOG2363 Protein subunit of nuclear ribonuclease P (RNase P), at 493,433 to 494,833 9505 mRNA_1138: 9506 - K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1, at 495,296 to 498,898 9506 mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499,455 to 501,152 9507

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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494,938 - -0.8
498,904 + +2.0
498,905 - +0.5
499,015 - +1.1
499,031 + -2.2
499,042 + +2.2
499,058 - -0.3
499,059 - +0.2
499,063 + -0.6
499,090 + +0.4
499,169 - -0.5
499,182 + +0.1
499,276 + +1.9
499,377 + -0.2
499,503 - +1.5
499,504 - -0.7
499,523 + -0.5
499,795 - 9507 mRNA_1139 0.20 +0.2

Or see this region's nucleotide sequence