Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1142

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9509 and 9510 are separated by 132 nucleotides9510 and 9511 are separated by 362 nucleotides mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502,606 to 503,454 9509 mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503,587 to 505,304 9510 mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505,667 to 510,461 9511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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502,726 - 9509 mRNA_1141 0.14 +2.0
503,043 + 9509 mRNA_1141 0.51 +0.0
503,286 - 9509 mRNA_1141 0.80 +0.3
503,429 - -2.6
504,146 + 9510 mRNA_1142 0.33 -1.0
505,332 - -0.3
505,339 + +1.6
505,461 - +0.7
505,485 + +0.5
505,576 + -0.0
505,585 - +0.5
505,596 + -0.3
505,598 - -0.7
505,602 + +1.1
505,604 + -0.7
505,605 + +0.2
505,749 - +0.5
505,902 + +0.4
506,038 - +0.8
506,213 + 9511 mRNA_1143 0.11 +0.9

Or see this region's nucleotide sequence