Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1146

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9513 and 9514 are separated by 449 nucleotides9514 and 9515 are separated by 294 nucleotides mRNA_1145: 9513 - K00669 AANAT arylalkylamine N-acetyltransferase, at 512,734 to 513,942 9513 mRNA_1146: 9514 - K06682 TEM1 Gtp-binding protein of the ras superfamily involved in termination of M-phase, at 514,392 to 515,549 9514 mRNA_1147: 9515 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 515,844 to 517,256 9515

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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513,597 - 9513 mRNA_1145 0.71 +0.7
513,690 - 9513 mRNA_1145 0.79 +0.4
513,716 + 9513 mRNA_1145 0.81 +1.1
513,986 - +0.9
514,131 + +1.5
514,134 - +0.8
514,675 + 9514 mRNA_1146 0.24 +0.4
514,721 - 9514 mRNA_1146 0.28 +0.4
514,858 - 9514 mRNA_1146 0.40 -0.7
514,859 + 9514 mRNA_1146 0.40 -0.5
514,864 - 9514 mRNA_1146 0.41 -0.8
514,874 - 9514 mRNA_1146 0.42 -0.6
514,895 - 9514 mRNA_1146 0.43 +1.2
515,117 - 9514 mRNA_1146 0.63 +1.6
515,125 - 9514 mRNA_1146 0.63 +0.9
515,281 - 9514 mRNA_1146 0.77 +0.5
515,724 + +1.5
515,876 + -0.8
515,992 - 9515 mRNA_1147 0.10 +0.4
516,438 + 9515 mRNA_1147 0.42 +0.8
516,461 + 9515 mRNA_1147 0.44 -1.0
516,461 - 9515 mRNA_1147 0.44 -0.2
516,463 + 9515 mRNA_1147 0.44 +0.1

Or see this region's nucleotide sequence