Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1153

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9520 and 9521 are separated by 108 nucleotides9521 and 9522 are separated by 492 nucleotides mRNA_1152: 9520 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 523,077 to 524,441 9520 mRNA_1153: 9521 - K13513 LCLAT1, AGPAT8 lysocardiolipin and lysophospholipid acyltransferase, at 524,550 to 526,104 9521 mRNA_1154: 9522 - Hypothetical Protein, at 526,597 to 527,643 9522

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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523,628 - 9520 mRNA_1152 0.40 -0.4
523,844 + 9520 mRNA_1152 0.56 -0.1
523,894 - 9520 mRNA_1152 0.60 +1.7
524,045 - 9520 mRNA_1152 0.71 +0.9
524,148 - 9520 mRNA_1152 0.78 +0.8
524,178 - 9520 mRNA_1152 0.81 +0.3
524,639 - -0.3
524,833 + 9521 mRNA_1153 0.18 -1.3
525,743 + 9521 mRNA_1153 0.77 -0.1
525,769 + 9521 mRNA_1153 0.78 -0.1
526,021 - -0.5
526,177 + -0.2
526,446 + -0.9
526,479 - -0.9
526,481 + +0.3
526,508 + -0.4
526,509 - -0.4
526,605 - +1.0
526,761 + 9522 mRNA_1154 0.16 +2.1
526,771 + 9522 mRNA_1154 0.17 -0.8
526,941 - 9522 mRNA_1154 0.33 +0.8
526,952 + 9522 mRNA_1154 0.34 +0.0
526,954 - 9522 mRNA_1154 0.34 -0.7

Or see this region's nucleotide sequence