Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1184

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9551 and 9552 are separated by 558 nucleotides9552 and 9553 are separated by 432 nucleotides mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596,710 to 598,781 9551 mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599,340 to 600,971 9552 mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601,404 to 603,765 9553

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
598,381 + 9551 mRNA_1183 0.81 +1.4
598,422 + 9551 mRNA_1183 0.83 +0.8
598,658 - +0.8
598,663 + +0.7
598,679 - +0.5
598,705 + +1.4
598,802 - +2.4
598,831 + +1.9
598,963 - +0.6
598,965 - +0.5
598,969 - +0.7
598,970 + +1.6
598,978 + +0.1
598,983 + -0.9
598,985 + +0.9
599,000 - +0.6
599,002 - +0.6
599,004 - +1.7
599,012 + -0.9
599,149 - -0.1
599,181 + +0.8
599,295 + -0.2
599,298 - -1.0
599,299 - +0.5
599,314 + -0.8
599,410 + -0.9
599,455 - -0.4
599,997 + 9552 mRNA_1184 0.40 -1.0
600,037 + 9552 mRNA_1184 0.43 +2.3
600,069 - 9552 mRNA_1184 0.45 -1.8
600,078 + 9552 mRNA_1184 0.45 +1.1
600,145 - 9552 mRNA_1184 0.49 +1.1
600,280 - 9552 mRNA_1184 0.58 -0.1
600,348 - 9552 mRNA_1184 0.62 +0.7
600,433 + 9552 mRNA_1184 0.67 +0.2
600,561 - 9552 mRNA_1184 0.75 -0.2
600,741 - 9552 mRNA_1184 0.86 +0.0
600,893 + -0.5
601,052 - -0.8
601,147 - +0.4
601,176 + +0.8
601,177 + +2.8
601,186 + +2.6
601,197 - -1.4
601,204 + +0.1
601,205 + +1.4
601,211 - +1.1
601,217 - +0.3
601,359 + -0.3
601,502 - +1.3
601,519 + -0.2
601,610 - -1.4
601,705 - 9553 mRNA_1185 0.13 +0.9
601,792 + 9553 mRNA_1185 0.16 +0.0
601,840 + 9553 mRNA_1185 0.18 -2.0
601,917 - 9553 mRNA_1185 0.22 +0.9

Or see this region's nucleotide sequence