Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1192

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9559 and 9560 are separated by 130 nucleotides9560 and 9561 are separated by 314 nucleotides mRNA_1191: 9559 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 615,062 to 616,261 9559 mRNA_1192: 9560 - KOG2504 Monocarboxylate transporter, at 616,392 to 618,414 9560 mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618,729 to 620,711 9561

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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615,405 - 9559 mRNA_1191 0.29 +0.6
615,405 - 9559 mRNA_1191 0.29 +1.3
615,409 - 9559 mRNA_1191 0.29 +1.3
615,486 + 9559 mRNA_1191 0.35 +0.0
615,577 - 9559 mRNA_1191 0.43 +1.8
615,708 - 9559 mRNA_1191 0.54 +0.8
615,718 + 9559 mRNA_1191 0.55 +0.1
615,754 + 9559 mRNA_1191 0.58 -0.9
616,021 - 9559 mRNA_1191 0.80 +3.1
616,056 - 9559 mRNA_1191 0.83 -1.2
616,129 - 9559 mRNA_1191 0.89 +1.1
616,130 + 9559 mRNA_1191 0.89 +0.5
616,130 + 9559 mRNA_1191 0.89 +0.8
616,144 - +1.0
616,153 + -0.2
616,283 + +0.4
616,305 - +0.9
616,405 + -0.5
616,597 - 9560 mRNA_1192 0.10 +0.1
616,608 + 9560 mRNA_1192 0.11 +0.0
616,618 + 9560 mRNA_1192 0.11 -0.1
616,730 + 9560 mRNA_1192 0.17 +1.1
616,731 + 9560 mRNA_1192 0.17 -0.5
616,735 + 9560 mRNA_1192 0.17 +0.2
616,844 - 9560 mRNA_1192 0.22 -0.3
616,888 - 9560 mRNA_1192 0.25 +2.4
616,898 + 9560 mRNA_1192 0.25 -0.6
616,992 - 9560 mRNA_1192 0.30 +0.3
617,014 - 9560 mRNA_1192 0.31 -0.1
617,171 + 9560 mRNA_1192 0.39 -1.1
617,632 - 9560 mRNA_1192 0.61 +0.7
617,647 + 9560 mRNA_1192 0.62 -0.2
617,921 - 9560 mRNA_1192 0.76 -0.4
617,953 + 9560 mRNA_1192 0.77 +0.1
618,052 + 9560 mRNA_1192 0.82 -0.2
618,052 - 9560 mRNA_1192 0.82 +0.2
618,192 - 9560 mRNA_1192 0.89 -0.9
618,229 - +2.6
618,229 + -0.1
618,244 + -0.2
618,371 + -0.7
618,381 + +1.0
618,405 + +0.5
618,416 - +0.2
618,417 + +0.7
618,418 + +1.0
618,418 + -1.3
618,418 + -0.1
618,418 + +0.6
618,418 + -0.5
618,419 + +1.1
618,419 + +1.4
618,425 + +1.8
618,530 + +1.4
618,536 + +2.0
618,576 + +2.5
618,627 - +2.5
618,638 - -0.4
618,641 - +0.5
618,667 + +0.2
618,681 - -1.3
618,710 + +0.4
618,713 - +0.0
618,773 + -0.4
618,931 - 9561 mRNA_1193 0.10 -0.3
619,053 + 9561 mRNA_1193 0.16 +0.7
619,270 + 9561 mRNA_1193 0.27 +1.5

Or see this region's nucleotide sequence