Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1201

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9568 and 9569 are separated by 201 nucleotides mRNA_1200: 9568 - KOG3132 m3G-cap-specific nuclear import receptor (Snurportin1), at 636,732 to 638,216 9568 mRNA_1201: 9569 - K12625 LSM6 U6 snRNA-associated Sm-like protein LSm6, at 638,418 to 638,898 9569

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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637,499 - 9568 mRNA_1200 0.52 +1.5
637,668 - 9568 mRNA_1200 0.63 -0.9
637,693 + 9568 mRNA_1200 0.65 +0.5
637,696 - 9568 mRNA_1200 0.65 +0.8
638,006 - 9568 mRNA_1200 0.86 -0.6
638,166 + +1.6
638,193 - -0.0
639,063 - +2.1
639,300 - -0.9
639,315 - +2.7
639,322 + +1.0
639,325 + -0.1
639,731 - +0.2
639,736 - +0.2
639,737 + -0.1
639,738 + +1.3
639,740 + +1.3
639,744 + -1.0
639,746 - +0.5
639,749 - +2.0
639,754 - +1.0
639,759 - +0.7
639,761 - +1.3
639,763 + +0.6
639,764 + +0.2
639,765 + +1.0
639,766 + +1.1
639,766 - -0.8
639,767 - -0.4
639,769 - +1.7
639,771 - +0.3
639,780 - -1.3
639,781 + +1.1
639,781 + +1.1
639,783 + +0.1
639,790 - +1.1
639,810 + +0.7
639,817 - +0.4
639,852 - -0.1
639,854 - -0.6
639,876 - -0.1
639,876 - +0.3

Or see this region's nucleotide sequence