Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1237

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9604 and 9605 are separated by 271 nucleotides9605 and 9606 are separated by 624 nucleotides mRNA_1236: 9604 - K02377 TSTA3, fcl GDP-L-fucose synthase, at 722,261 to 724,161 9604 mRNA_1237: 9605 - SUPERFAMILY--SSF52047, at 724,433 to 725,551 9605 mRNA_1238: 9606 - SUPERFAMILY--SSF52047, at 726,176 to 728,961 9606

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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724,220 - +0.2
724,390 - +0.4
724,421 - +1.7
724,700 - 9605 mRNA_1237 0.24 +0.3
724,708 + 9605 mRNA_1237 0.25 +1.1
724,710 - 9605 mRNA_1237 0.25 -0.9
724,719 + 9605 mRNA_1237 0.26 -0.0
724,797 + 9605 mRNA_1237 0.33 +1.4
724,809 + 9605 mRNA_1237 0.34 +0.1
724,816 + 9605 mRNA_1237 0.34 +1.6
724,817 - 9605 mRNA_1237 0.34 +1.1
725,009 + 9605 mRNA_1237 0.51 +0.4
725,143 + 9605 mRNA_1237 0.63 +1.5
725,492 + +0.3
725,698 - -0.3
725,715 + -0.2
725,715 - -1.0
725,750 - -1.1
725,752 - -0.6
725,753 - +2.1
725,771 + +1.5
725,877 + +0.4
726,057 + +0.8
726,077 - +0.0
726,206 - +0.6
726,208 - +2.1
726,218 - +1.1
726,345 - +0.5
726,386 + +0.5
726,406 - +0.7

Or see this region's nucleotide sequence